Tools (written in C using htslib) for manipulating next-generation sequencing data

Toolkit for processing sequences in FASTA/Q formats

De novo assembler for single molecule sequencing reads using repeat graphs

C library for high-throughput sequencing data formats

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

Remote protein homology detection suite.

Fast and accurate de novo assembler for long reads

Windowed Adaptive Trimming for fastq files using quality

Nanopore data assembler

Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.

De novo protein structure prediction using iteratively predicted structural constraints

This repository contains the burrow-wheelr's transform algorithm along with its implementation