I'm Victor Perez,an specialist in bio-image processing and analysis who finds joy in creating custom image processing solutions. As a passionate for microscopy 🔬 and image formation, I'm happy to work with data from different sources, bright-field, confocal, light-sheet, super-resolution, second-harmonic and multiplexed-imaging.
- Role: Postdoc at the Spatial Omics | Schapiro Lab https://www.schapirolab.com
- Location: Heidelberg, Germany
- Organization: Institute for Computational Biomedicine
- Values: share knowledge, active learning,
Library to register MALDI and MACSima images using a "fiducial" antibody marker.
View Repository
Library to register tiles and sample ROIs acquired with the first commercial implementation of CODEX. The purpose of this library is to enable having a larger area of the tissue in a single image. View Repository
Package to stage the raw data of the MACSima platform ready for registration with ashlar and/or mcmicro. Staging involves, flat-field correction, re-writing of single-image ".tif" files into multi-channel ".ome.tif"s, parsing of metadata and calculation of image qc metrics. View Repository
Package with the same features as the project above but with the inclusion of a function to determine the in-focus plane of a 3D stack. View Repository
- Teaching: private and public courses for processing and analysis of multiplexed-images,e.g at physalia.
- super-resolution microscopy and image reconstruction: View Publication
- Light-sheet and super-resolution (SIM): View Publication
- Radiomics analysis,contributed with the backend scripts of a browser-based radiomics app : View Repository