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SEPI Public
SEPI - Salmonella enterica poultry imports . Data analysis code for the study 'Genomic surveillance of Salmonella enterica Minnesota strains from poultry products imported into South Africa'
Creative Commons Zero v1.0 Universal UpdatedOct 28, 2025 -
NWUPathogenGenomicsWorkshop Public
Materials for North West University Pathogen Genomics workshop
HTML UpdatedOct 23, 2025 -
SCAPE Public
SCAPE - StaphyloCoccus Aureus Pangenome Exploration
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LIVID Public
LIVID is a tool for extracting a locus from a given bacterial genome sequence and identifying variants when compared to a reference locus.
Shell MIT License UpdatedNov 22, 2024 -
GASP Public
Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111
MIT License UpdatedNov 22, 2023 -
GDBBS2022_poster_VR Public
Rmd and images for Emory University GDBBS 2022 symposium poster
UpdatedJan 16, 2023 -
AgrVATE Public
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedApr 26, 2021 -
bactopia Public
Forked from bactopia/bactopiaA flexible pipeline for complete analysis of bacterial genomes
HTML MIT License UpdatedDec 19, 2020 -
snippy Public
Forked from tseemann/snippy✂️ ⚡ Rapid haploid variant calling and core genome alignment
Perl GNU General Public License v2.0 UpdatedMar 28, 2020
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