Dependabot updates by AntObi · Pull Request #298 · WMD-group/SMACT

AntObi · 2024-08-15T12:10:12Z

Pulling in dependabot updates

Summary by CodeRabbit

New Features
- Updated several package dependencies to improve functionality and stability, including pillow, python-dateutil, tqdm, and uncertainties.
- Included a version constraint for pymatgen to ensure compatibility with a known range of dependencies.
Bug Fixes
- Upgraded pytest to the latest version for enhanced testing capabilities, potentially including bug fixes and performance improvements.

Merge develop branch changes into the master branch

Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.3.0 to 10.4.0. - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](python-pillow/Pillow@10.3.0...10.4.0) --- updated-dependencies: - dependency-name: pillow dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>

Bumps [python-dateutil](https://github.com/dateutil/dateutil) from 2.9.0 to 2.9.0.post0. - [Release notes](https://github.com/dateutil/dateutil/releases) - [Changelog](https://github.com/dateutil/dateutil/blob/master/NEWS) - [Commits](dateutil/dateutil@2.9.0...2.9.0.post0) --- updated-dependencies: - dependency-name: python-dateutil dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com>

Bumps [uncertainties](https://github.com/lmfit/uncertainties) from 3.1.7 to 3.2.2. - [Release notes](https://github.com/lmfit/uncertainties/releases) - [Changelog](https://github.com/lmfit/uncertainties/blob/master/CHANGES.rst) - [Commits](lmfit/uncertainties@3.1.7...3.2.2) --- updated-dependencies: - dependency-name: uncertainties dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>

Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.0 to 8.3.2. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@8.2.0...8.3.2) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>

Bumps [tqdm](https://github.com/tqdm/tqdm) from 4.66.3 to 4.66.4. - [Release notes](https://github.com/tqdm/tqdm/releases) - [Commits](tqdm/tqdm@v4.66.3...v4.66.4) --- updated-dependencies: - dependency-name: tqdm dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com>

Combined PR

coderabbitai · 2024-08-15T12:10:20Z

Walkthrough

This update introduces version upgrades for several dependencies in both requirements.txt and requirements-dev.txt. Notably, pytest has been upgraded to enhance testing capabilities, while various libraries in requirements.txt, including pillow and uncertainties, have also been updated to improve functionality and stability. Additionally, the version constraint for pymatgen has been refined in setup.py to ensure compatibility with future releases. These changes facilitate a more robust development environment.

Changes

Files	Change Summary
`requirements-dev.txt`	Upgraded `pytest` from `8.2.0` to `8.3.2`.
`requirements.txt`	Updated versions: `pillow` from `10.3.0` to `10.4.0`, `python-dateutil` from `2.9.0` to `2.9.0.post0`, `tqdm` from `4.66.3` to `4.66.4`, and `uncertainties` from `3.1.7` to `3.2.2`.
`setup.py`	Modified `pymatgen` version constraint from `>=2024.2.20` to `>=2024.2.20,<2024.8.8`.

Sequence Diagram(s)

sequenceDiagram
    participant A as Developer
    participant B as CI System
    participant C as Test Suite
    participant D as Production

    A->>B: Push changes
    B->>C: Run tests with updated dependencies
    C-->>B: Tests pass
    B->>D: Deploy to production

🐰 In the garden, changes bloom,
New versions bring away the gloom.
With pytest and friends, we leap,
Enhancements made, stability’s deep.
Hop along, let’s code and cheer,
For brighter days, the updates are here! 🌼

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coderabbitai

Actionable comments posted: 0

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 8500179 and f7a72b7.

Files selected for processing (2)

requirements-dev.txt (1 hunks)
requirements.txt (3 hunks)

Files skipped from review due to trivial changes (1)

requirements.txt

Additional comments not posted (1)

requirements-dev.txt (1)

4-4: Upgrade pytest to version 8.3.2.

The update to pytest from version 8.2.0 to 8.3.2 likely includes bug fixes, performance improvements, or new features. Ensure that the updated version is compatible with your existing test suite and other dependencies.

codecov · 2024-08-15T13:46:46Z

Codecov Report

Attention: Patch coverage is 90.14085% with 7 lines in your changes missing coverage. Please review.

Project coverage is 75.26%. Comparing base (b126e9f) to head (e91d620).
Report is 49 commits behind head on develop.

Files	Patch %	Lines
smact/dopant_prediction/doper.py	79.31%	6 Missing ⚠️
smact/screening.py	91.66%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop     #298      +/-   ##
===========================================
- Coverage    75.40%   75.26%   -0.14%     
===========================================
  Files           24       24              
  Lines         2236     2361     +125     
===========================================
+ Hits          1686     1777      +91     
- Misses         550      584      +34

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

Restrict pymatgen version due to windows

coderabbitai

Actionable comments posted: 0

Review details

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Review profile: CHILL

Commits

Files that changed from the base of the PR and between f7a72b7 and 149297e.

Files ignored due to path filters (16)

examples/Practical_tutorial/Images/ASO.gif is excluded by !**/*.gif
examples/Practical_tutorial/Images/Combinations_vs_Permutations.png is excluded by !**/*.png
examples/Practical_tutorial/Images/ZurMcGill.jpg is excluded by !**/*.jpg
examples/Practical_tutorial/Images/anderson.gif is excluded by !**/*.gif
examples/Practical_tutorial/Images/atomsinbox.png is excluded by !**/*.png
examples/Practical_tutorial/Images/binary-graph.tiff is excluded by !**/*.tiff
examples/Practical_tutorial/Images/forascii.jpg is excluded by !**/*.jpg
examples/Practical_tutorial/Images/lattice_match.gif is excluded by !**/*.gif
examples/Practical_tutorial/Images/linus-pauling.png is excluded by !**/*.png
examples/Practical_tutorial/Images/pauling-equation.jpg is excluded by !**/*.jpg
examples/Practical_tutorial/Images/pauling-equation.png is excluded by !**/*.png
examples/Practical_tutorial/Images/pauling-equation.tiff is excluded by !**/*.tiff
examples/Practical_tutorial/Images/quaternary-graph.tiff is excluded by !**/*.tiff
examples/Practical_tutorial/Images/site_overlap.gif is excluded by !**/*.gif
examples/Practical_tutorial/Images/ternary-graph.tiff is excluded by !**/*.tiff
examples/Practical_tutorial/Images/toc.gif is excluded by !**/*.gif

Files selected for processing (1)

setup.py (1 hunks)

Additional comments not posted (1)

setup.py (1)

55-55: Verify compatibility with the new pymatgen version constraint.

The version constraint for pymatgen has been updated to >=2024.2.20,<2024.8.8. This change helps prevent compatibility issues with versions released after 2024.8.8. Ensure that the project has been tested with this version range to confirm stability and functionality.

Dependabot updates

AntObi and others added 12 commits July 10, 2024 15:07

Merge pull request #288 from WMD-group/develop

c9a97c3

Merge develop branch changes into the master branch

Merge dependabot/pip/tqdm-4.66.4 into combine-prs-branch

8d3bdf7

Merge dependabot/pip/pytest-8.3.2 into combine-prs-branch

5a712bd

Merge dependabot/pip/uncertainties-3.2.2 into combine-prs-branch

5a8a49c

Merge dependabot/pip/python-dateutil-2.9.0.post0 into combine-prs-branch

b80ee45

Merge dependabot/pip/pillow-10.4.0 into combine-prs-branch

623e3f6

Merge pull request #296 from WMD-group/combine-prs-branch

f7a72b7

Combined PR

coderabbitai Bot reviewed Aug 15, 2024

View reviewed changes

Delete examples/Practical_tutorial directory

e91d620

AntObi added 2 commits August 15, 2024 15:01

Restrict pymatgen version due to windows

6df06a8

Merge pull request #301 from WMD-group/AntObi-patch-1

149297e

Restrict pymatgen version due to windows

coderabbitai Bot reviewed Aug 15, 2024

View reviewed changes

AntObi merged commit 92e9bc9 into develop Aug 15, 2024

coderabbitai Bot mentioned this pull request Nov 21, 2024

Download crystal space optional dependencies in ci #331

Merged

11 tasks

coderabbitai Bot mentioned this pull request Dec 1, 2024

Migrate CI dependency installation from pip to uv #338

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coderabbitai Bot mentioned this pull request Dec 18, 2024

Merge develop branch into master #352

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coderabbitai Bot mentioned this pull request Apr 1, 2025

Update dependabot.yml #391

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KingaMas pushed a commit to KingaMas/SMACT that referenced this pull request Apr 25, 2025

Merge pull request WMD-group#298 from WMD-group/master

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Dependabot updates#298
AntObi merged 15 commits into
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