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Starred repositories
LikelihoodProfiler is a Julia package for practical identifiability analysis and confidence intervals estimation.
Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equat…
OCTIS: Comparing Topic Models is Simple! A python package to optimize and evaluate topic models (accepted at EACL2021 demo track)
NMF: A Flexible R package for Nonnegative Matrix Factorization
Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
Methods for detecting doublets in single-cell sequencing data
Ultrafast TCR clustering algorithm based on geometric isometry
🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
Cache efficient implementation for Latent Dirichlet Allocation
Decide if a set of songs is suitable for listening to them while practising sports.
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
Maple tools and scripts for analyzing structural identifiability and discrete symmetries in control systems, as presented in our paper. Includes example results and documentation for reproducibility.
Free open public domain football data in JSON incl. English Premier League, Bundesliga, Primera División, Serie A and more - No API key required ;-)
Robust, Fast, and Parallel Global Sensitivity Analysis (GSA) in Julia
a modeling environment tailored to parameter estimation in dynamical systems
Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.
MATLAB toolbox for analysing controllability and accessibility of nonlinear systems.