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Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
An open and interoperable data framework for spatial omics data
A fast image processing library with low memory needs.
A fast, simple & powerful blog framework, powered by Node.js.
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…
Open source code for AlphaFold 2.
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.
A tiny Python library for writing multi-channel TIFF stacks.
Multiple Fill, Color and Other Scales in `ggplot2`
Green Frog https://github.com/redleafnew/zotero-updateifs 的easyScholar数据版。更新影响因子，其他一系列工具，详见Readme
Bio-Formats image file format to raw format converter
tools for finding discrete bright spots in images (for multiplexed FISH, includes background subtraction, deconv, and blob detection)
Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
Utils and convenience functions for large-scale bio-image analysis.
Feature extraction from GEOJson nuclei and tissue segmentation maps
ClusterMap for multi-scale clustering analysis of spatial gene expression
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
GPT4All: Run Local LLMs on Any Device. Open-source and available for commercial use.