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Parsers and algorithms for computational chemistry logfiles

Python 379 174 Updated Nov 7, 2025

A library for efficient similarity search and clustering of dense vectors.

C++ 37,818 4,098 Updated Nov 7, 2025

Clean APIs for data cleaning. Python implementation of R package Janitor

Python 1,461 173 Updated Nov 6, 2025

The official sources for the RDKit library

HTML 3,135 952 Updated Nov 6, 2025

Python module for quantum chemistry

Python 1,468 649 Updated Nov 6, 2025

Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity

Jupyter Notebook 71 29 Updated Nov 6, 2025

Bayesian Optimization and Design of Experiments

Python 408 59 Updated Nov 6, 2025

Package for Retrosynthetic Planning

Python 168 26 Updated Nov 6, 2025

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Python 1,484 735 Updated Nov 6, 2025

All Algorithms implemented in Python

Python 212,576 49,165 Updated Nov 6, 2025

AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.

Python 601 174 Updated Nov 6, 2025

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

Jupyter Notebook 923 217 Updated Nov 6, 2025

Interactive molecule viewer for 2D structures

Python 226 31 Updated Nov 4, 2025

A collective list of free APIs

Python 376,223 39,780 Updated Nov 4, 2025

Collection of 'compound scripts' for use with the ORCA quantum chemistry software

90 23 Updated Nov 4, 2025

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Python 6,311 1,929 Updated Nov 3, 2025

This set of essential and valuable microservices is designed to be accessed via API calls to support cheminformatics.

JavaScript 58 9 Updated Nov 3, 2025

21 Lessons, Get Started Building with Generative AI

Jupyter Notebook 101,435 53,822 Updated Nov 3, 2025

Learning in infinite dimension with neural operators.

Python 3,047 753 Updated Nov 1, 2025

automated reaction profile generation

Python 189 63 Updated Oct 31, 2025

Papers about explainability of GNNs

765 71 Updated Oct 27, 2025

Python-centric Cookiecutter for Molecular Computational Chemistry Packages

Python 442 92 Updated Oct 27, 2025

Thermodynamics and Phase Equilibrium component of Chemical Engineering Design Library (ChEDL)

Python 705 121 Updated Oct 26, 2025

Packmol - Initial configurations for molecular dynamics simulations

Fortran 311 55 Updated Oct 24, 2025

A series of jupyter notebooks to help chemistry students learn python for analytical chemistry

Jupyter Notebook 52 26 Updated Oct 22, 2025

overview of datasets for ML in chemistry

358 39 Updated Oct 22, 2025

Code for the manim-generated scenes used in 3blue1brown videos

Python 9,946 1,996 Updated Oct 14, 2025

Message Passing Neural Networks for Molecule Property Prediction

Python 2,157 695 Updated Oct 13, 2025

Scientific Computing for Chemists with Python is a free book for teaching basic coding skills to chemists using Python, Jupyter notebooks, and the other Python software. This textbook teaches a var…

Jupyter Notebook 295 91 Updated Oct 13, 2025

DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

Python 162 17 Updated Oct 10, 2025
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