The CSV magician

Symmetric DUST for finding low-complexity regions in DNA sequences

🔬 Path to a free self-taught education in Bioinformatics!

A collection of public LabKey modules developed by the Bimber Lab

A curated list of awesome Bioinformatics libraries and software.

📚 Import Bibtex publications and Jupyter Notebook blog posts into your Markdown website or book. 将Bibtex转换为Markdown网站

PyTorch implementation of some attentions for Deep Learning Researchers.

This project reproduces the book Dive Into Deep Learning (https://d2l.ai/), adapting the code from MXNet into PyTorch.

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Repo for generating genetic trees from specified demographic models and running predictions via PyTorch Geometric

A PyTorch annotated replication of the paper: https://arxiv.org/abs/2006.10637

Tabular seff

Generate Lorenz plots and Coverage plots directly from BAM files

Simple tool for capturing alignment regions with sufficient quality for genotyping.

Tools for working with genomic and high throughput sequencing data.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.

Pipeline for CoAdapTree to autonomously process raw fastq files through SNP calling with VarScan and subsequent filtering following bioinformatic best practices.

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platf…

Colourful & robust configuration files and utilities for Mac, Linux & BSD

Flake8 plugin for Vim

A minimal syntax highlighting plugin for Vim for SLiM's edios language

Tmux configuration, that supercharges your tmux to build cozy and cool terminal environment

Tmux configuration, that supercharges your tmux to build cozy and cool terminal environment

Seamlessly run Python code in IPython from Vim

my vim/neovim config

Interactive Repl Over Neovim

simple examples of using supervised machine learning for population genetics inference