Matlab functions to analyse gene expression and multiple other types of neuroimaging data on the cortical surface

Tools for processing Nightingale NMR biomarker data in UK Biobank

https://doi.org/10.1101/2021.02.22.432228

This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in "On testing for spatial correspondence between maps of huma…

Gene Set Enrichment Analysis in Python

A toolbox for custom data visualization in the subcortex and cerebellum

A simple pythonic interface to biomart.

R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data with in situ RNA patterns from the Allen Developing Mouse Br…

Brain-related -omics data

Accelerated BLAST compatible local sequence aligner.

Genome wide orthology inference and dNdS estimation

A curated list of awesome Python code formatters

Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".

Interface to use R from Python

Python package to access a cacophony of neuro-imaging file formats

A statistics and context decoding toolbox for neuroimaging.

Maps of cortical organization

agent-based S-I-R model for neurodegeneration

A tool for AI-assisted meta-review of scientific papers

Code for computing interareal axonal connectivity in mouse

Code to reproduce analyses of mouse cortical gradients

Workflow for retrieving spatial gene-expression data from the Allen Institute's Mouse Brain Atlas

Machine Learning Course, Sharif University of Technology

Fast brain extraction using neural networks

3D visualization and mesh analysis for science and engineering

A very small toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)