a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Weave insitu data together

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Font management for matplotlib

Notebooks and code for the CarpeDiem project

borb is a library for reading, creating and manipulating PDF files in python.

Repository to perform mapping of new datasets to the Human Lung Cell Atlas.

This repository contains all code used for the Human Lung Cell Atlas project.

add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

Collection of useful scripts, largely for sequence analysis

Single-cell analysis in Python. Scales to >100M cells.

Zotero for iOS

A set of tools to keep your pinned Python dependencies fresh.

Formalizing and benchmarking open problems in single-cell genomics

🔽 Display any CSV (comma separated values) file as a searchable, filterable, pretty HTML table

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

R toolkit for single cell genomics

Django DB router for stateful master-slave replication

Simple UiKit for complex web apps

Tiny interface for Atlassian JIRA based on JSON-RPC