Discussions

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  IONMODE in MGF always sets IONMODE=POSITIVE for negative-mode spectral libraries

  dayalea asked Dec 20, 2025 in Q&A · Unanswered

  

  

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  How can I get the confirmation email to activate my registration?

  gerardonat2011-max asked Dec 12, 2025 in Q&A · Unanswered

  

  

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  prroblem with raw data overview mzmine 4.8.5

  maiphuongy asked Dec 10, 2025 in Q&A · Unanswered

  

  

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  Change in the "Network overview" after closing the project.

  Tranthithanhnha asked Dec 3, 2025 in Q&A · Unanswered

  

  

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  Unable to log in with my institutional email

  BramvdK23 asked Nov 12, 2025 in Q&A · Closed · Unanswered

  

  

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  "missing mass list in the scan" Error message

  yes-tlv asked Nov 9, 2025 in Q&A · Unanswered

  

  

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  Batch spectral library give me an empty file

  matosts asked Nov 6, 2025 in Q&A · Closed · Unanswered

  

  

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  How to handle multiple features with the same annotation & MS/MS match but very different RTs (only final Bruker bucket table available)

  anesthesiologistxia asked Nov 1, 2025 in Q&A · Unanswered

  

  

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  Spectral comparison problem with home made database

  Celine-Fr asked Jul 25, 2025 in Q&A · Unanswered

  

  

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  Issues with Van Krevelen diagram

  Mathias-Hamitouche asked Oct 23, 2025 in Q&A · Closed · Unanswered

  

  

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  Large Intensity Variations Cause Peak Integration Failure

  samantha-swan-ocme started Oct 9, 2025 in General

  

  

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  Alignment problem with MALDI-TIMS data - mzmine 4.7.27

  maiphuongy asked Oct 3, 2025 in Q&A · Unanswered

  

  

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  exporting MS2 level data

  Mahsa14927 asked Sep 29, 2025 in Q&A · Unanswered

  

  

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  Area Integration Question

  nmayn002 asked Aug 7, 2025 in Q&A · Unanswered

  

  

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  Error Exporting GNPS Files After Removing Join Aligner in Batch Mode

  justinchang252 started Aug 4, 2025 in General

  

  

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  How can I get the S/N ratio for each feature? mzmine 4.7.8 version

  Leegunwoo0526 asked Aug 1, 2025 in Q&A · Unanswered

  

  

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  Help with MZmine 2.53 parameter settings for GC-MS data (new to metabolomics)

  IsabelleFuhrmann asked Jul 21, 2025 in Q&A · Unanswered

  

  

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  How to add NIST library to MZWIZARD

  yaelhartal-ship-it asked Jul 21, 2025 in Q&A · Unanswered

  

  

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  Reordering loaded files

  sbarnes-AL asked Jul 17, 2025 in Q&A · Unanswered

  

  

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  Resolving duplicate features from one compound

  Bysnhroach asked Jul 18, 2025 in Q&A · Unanswered

  

  

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  Processing the feature_list.xml file contained within a mzmine project zip

  kaisengit asked Jul 16, 2025 in Q&A · Unanswered

  

  

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  Rerun parts of a batch processing pipeline from the command line interface CLI

  kaisengit asked Jul 16, 2025 in Q&A · Unanswered

  

  

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  Comparison of Screening and MRM Data in MZmine – Issues with GC-MS/MS MRM Files

  Dennis81296 asked Jul 15, 2025 in Q&A · Unanswered

  

  

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  Temperature Programmed Desorption/Decomposition Direct Analysis in Real TIme Integration

  DomiDotso asked Jun 27, 2025 in Q&A · Unanswered

  

  

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  Importing Waters UNIFI .mzml file, getting Illegal base64 character a (Base64.java:852)

  vanwa71 asked Jun 24, 2025 in Q&A · Unanswered

  

  

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