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Commits on Nov 23, 2025

• add instructions for reproducing finding genes of interest (#121)

  pauldoucet

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Commits on Sep 1, 2025

• fix spatialdata new var name restrictions (#107)

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  pauldoucet

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  afd42c3

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Commits on Aug 31, 2025

• Support datasets >= 4.0.0 (#114)

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  pauldoucet

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  98bad73

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Commits on Aug 3, 2025

• downgrade 'datasets' version (#112)

  pauldoucet

  authored
  6759f3d

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Commits on May 1, 2025

• add bench results for H0-mini (#105)

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  pauldoucet

  authored
  162c42f

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Commits on Apr 26, 2025

• fix use_mask=False in dump_patches (#103)

  pauldoucet

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  4aeff88

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Commits on Feb 27, 2025

• Add H0-mini model, PhikonV2, Hibou Large and Kaiko-Base-8. (#96)

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  afilt

  and

  pauldoucet

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  568df6c

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Commits on Feb 8, 2025

• Cleanup Valis interface + make spatial data dependency optional (#94)

  pauldoucet

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  07bda9b

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Commits on Dec 14, 2024

• Update tutorial for Xenium pooling (#81)

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  pauldoucet

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  5a0cbba

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• Update tutorial for Xenium pooling (#80)

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  pauldoucet

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Commits on Dec 8, 2024

• Add additional benchmark config

  pauldoucet

  committed
  87e586f

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Commits on Dec 6, 2024

• Feature/hestbench flexibility (#77)

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  konst-int-i

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  755efbb

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Commits on Nov 23, 2024

• add doc for XeniumReader and ensemblID to gene names (#75)

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  pauldoucet

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  konst-int-i

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  c8bef8c

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Commits on Nov 14, 2024

• Make HEST-Benchmark deterministic (#73)

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  guillaumejaume

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  0512f57

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Commits on Nov 5, 2024

• add dask suppport and valis alignment (#69)

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  pauldoucet

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  b87046f

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Commits on Nov 2, 2024

• Update README.md (#66)

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  guillaumejaume

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  239b506

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• Guillaumejaume patch 1 (#65)

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  guillaumejaume

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  481d4c1

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Commits on Oct 30, 2024

• HESTData: update `to_spatial_data()``` (#63)

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  konst-int-i

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  pauldoucet

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  f24138a

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Commits on Oct 29, 2024

• Update README.md (#58)

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  guillaumejaume

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  8aa1279

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Commits on Sep 24, 2024

• add new samples and aligned transcripts (#53)

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  pauldoucet

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  56b2426

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Commits on Sep 12, 2024

• Refactor readthedocs (#49)

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  pauldoucet

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Commits on Sep 9, 2024

• Update 4-Running-HEST-Benchmark.ipynb (#48)

  guillaumejaume

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  006303b

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Commits on Aug 30, 2024

• Update README.md (#42)

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  guillaumejaume

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  92686d6

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Commits on Aug 29, 2024

• Add batch effect quantification methods (#41)

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  pauldoucet

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  guillaumejaume

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  7c62ef5

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Commits on Aug 21, 2024

• add patch coordinates when saving to .h5 (#37)

  pauldoucet

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Commits on Aug 15, 2024

• cleanup bench + new foundation models (#33)

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  pauldoucet

  and

  Guillaume Jaume

  authored
  2859c92

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Commits on Aug 13, 2024

• rm unused imports (#32)

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  guillaumejaume

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  Guillaume Jaume

  authored
  59f2673

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Commits on Aug 12, 2024

• move core methods to hestcore (#30)

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  pauldoucet

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  582ec99

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Commits on Aug 8, 2024

• re-add bench

  pauldoucet

  committed
  d3a281b

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Commits on Jul 30, 2024

• fix exception thrown if cucim installed (#26)

  pauldoucet

  authored
  8ffc85a

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• HEST-lib v1.1.0 (#25)

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  pauldoucet

  authored
  c8b11fb

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• Update README.md

  pauldoucet

  authored
  3b244af

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• Update README.md

  pauldoucet

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  727b396

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Commits on Jul 29, 2024

• Update HEST_v1_0_0 -> HEST_v1_0_2 (#24)

  pauldoucet

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  bbf90d3

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Commits on Jul 24, 2024

• add table with samples used in benchmakr (#23)

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  guillaumejaume

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  Guillaume Jaume

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  ef87061

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