Search results

Access to additional info. in xenium spatial data

Status: Open.

#118 In mahmoodlab/HEST;

· DabinJeong opened on Oct 2, 2025

Adding GrandQC Artefact Filtering

Status: Open.

#117 In mahmoodlab/HEST;

· Kexin-xu-01 opened on Sep 10, 2025

Incorporate Newer Foundation Models

Status: Open.

#116 In mahmoodlab/HEST;

· Kexin-xu-01 opened on Sep 8, 2025

"pip install" skips local_ckpts.json

Status: Open.

#115 In mahmoodlab/HEST;

· aowenson-imm opened on Sep 8, 2025

Dependency conflict with new xarray packages

Status: Open.

#113 In mahmoodlab/HEST;

· rushin682 opened on Aug 12, 2025

Xenium cell_id in transcripts and CellVit segmentation results

Status: Open.

#109 In mahmoodlab/HEST;

· Szym29 opened on Jun 14, 2025

Adapting SpatialData to naming restrictions for HEST samples

Status: Open.

#104 In mahmoodlab/HEST;

· rushin682 opened on Apr 27, 2025

st.save() error: only length-1 arrays can be converted to Python scalars

Status: Open.

#99 In mahmoodlab/HEST;

· katimbach opened on Apr 17, 2025

Loading raw Xenium data

Status: Open.

#97 In mahmoodlab/HEST;

· ekansh09 opened on Apr 2, 2025

UnboundLocalError: local variable 'pyvips' referenced before assignment

installation

Status: Open.

#95 In mahmoodlab/HEST;

· ShinHyun-soo opened on Feb 27, 2025

Is contrast enhancement applied on extracted patches ?

Status: Open.

#93 In mahmoodlab/HEST;

· abhi1998goyal opened on Feb 6, 2025

Error in downloading the EPM cancer Visium data

Status: Open.

#91 In mahmoodlab/HEST;

· aahsan045 opened on Feb 4, 2025