Hi authors,
I noticed a little error in the function pool_transcripts_xenium in src/readers.py. When the dataframe is a pandas object, it goes into the else, where the function get_indices_chunk, introduced in commit 1bb6115, is missing the first argument. This breaks the pandas path, which is the default usage shown in the tutorial notebook.
So, in line 1193 , I believe it should be cols_c = get_indices_chunk(df, key_x, key_y, instead of the current cols_c = get_indices_chunk(key_x, key_y,.
Hi authors,
I noticed a little error in the function
pool_transcripts_xeniuminsrc/readers.py. When the dataframe is apandasobject, it goes into theelse, where the functionget_indices_chunk, introduced in commit 1bb6115, is missing the first argument. This breaks thepandaspath, which is the default usage shown in the tutorial notebook.So, in line 1193 , I believe it should be
cols_c = get_indices_chunk(df, key_x, key_y,instead of the currentcols_c = get_indices_chunk(key_x, key_y,.