1. bash: configuration for bash (bashrc, bash_profile and so on...)
2. config: various configuration and templates, such as MoC and cmake.
3. scripts: utility scripts
4. shell: common configuration for shells (aliases, environment and functions).
5. templates: various template (tex, YouCompleteMe, Makefiles)
6. vim: vim configuration
7. X: X windows manager and desktop environment configuration
8. zsh: configuration for zsh

The python script install_configuration.py provides a quick way to install the configuration by means of symlinks.

The VIM plugins (in vim/vim/bundle) are all submodule! Remember to launch

git submodule init && git submodule update --init --recursive && git submodule foreach git pull origin master