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@mkhorton mkhorton commented Feb 25, 2025

Summary

DBRef is a bson type which holds a pointer to a specific document in a MongoDB collection. This PR adds support for serializing and de-serializing DBRef objects to monty.

Summary by CodeRabbit

  • New Features
    • Enhanced JSON processing to support BSON reference objects, improving the handling of database references in data exchange.
  • Tests
    • Introduced tests to verify the correct serialization and deserialization of BSON reference objects across various scenarios.
  • Documentation
    • Updated documentation to outline the new support for BSON reference objects.

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coderabbitai bot commented Feb 25, 2025

Walkthrough

The changes extend the JSON encoding and decoding functionality to support BSON DBRef objects. In the encoder, instances of DBRef are now checked and transformed into a dictionary format that includes module, class, and extra DBRef fields. The decoder has been updated to recognize these dictionaries and reconstruct the appropriate DBRef objects. Documentation strings and the jsanitize function's parameter description were updated accordingly. In the tests, a new case verifies this DBRef support, including error handling when using the default JSON serialization.

Changes

File(s) Change Summary
src/monty/json.py Updated MontyEncoder.default to handle BSON DBRef alongside ObjectId; modified MontyDecoder.process_decoded to reconstruct DBRef; updated docstrings and jsanitize parameter description.
tests/test_json.py Added an import for DBRef with error handling; introduced a new test test_dbref to verify that default JSON serialization raises an error and that the custom encoder/decoder correctly process DBRef objects.

Sequence Diagram(s)

sequenceDiagram
    participant Client
    participant MontyEncoder
    participant BSONLibrary

    Client->>MontyEncoder: Serialize DBRef instance
    MontyEncoder->>BSONLibrary: Check instance type (DBRef?)
    BSONLibrary-->>MontyEncoder: Confirm DBRef type
    MontyEncoder->>Client: Return dictionary with module, class, and DBRef fields
Loading
sequenceDiagram
    participant Client
    participant MontyDecoder
    participant BSONLibrary

    Client->>MontyDecoder: Deserialize JSON dictionary
    MontyDecoder->>BSONLibrary: Verify dictionary structure for DBRef
    BSONLibrary-->>MontyDecoder: Confirm DBRef representation
    MontyDecoder->>Client: Return reconstructed DBRef instance
Loading

Possibly related PRs

  • materialsvirtuallab/monty#729: Enhancements in BSON handling within the MontyEncoder and MontyDecoder classes, closely related to the DBRef support modifications in this PR.

Poem

I’m a rabbit who hops in code delight,
DBRef now dances in JSON’s light.
MontyEncoder and Decoder join the play,
With docs and tests to guide the way.
Here’s to bugs hopped away, day by day!
🐇💻

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Actionable comments posted: 1

🧹 Nitpick comments (2)
src/monty/json.py (2)

633-645: Consider compatibility with older Python versions.

The implementation uses the dictionary merge operator (|) introduced in Python 3.9. This might cause compatibility issues if the library needs to support older versions.

-                return {
-                    "@module": "bson.dbref",
-                    "@class": "DBRef",
-                } | o.as_doc()
+                d = {
+                    "@module": "bson.dbref",
+                    "@class": "DBRef",
+                }
+                d.update(o.as_doc())
+                return d

859-876: Good implementation of DBRef deserialization.

The implementation correctly handles the DBRef deserialization, including handling of the optional database field and arbitrary extra fields that DBRef can contain beyond the standard fields.

Consider adding a brief comment explaining why DBRef needs special handling for extra fields, as this is different from how most other types are handled:

# DBRef is special because it can contain arbitrary additional fields
# beyond the standard $ref, $id, and $db fields
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 35ffd2d and 736b986.

📒 Files selected for processing (2)
  • src/monty/json.py (6 hunks)
  • tests/test_json.py (2 hunks)
🧰 Additional context used
🪛 Ruff (0.8.2)
tests/test_json.py

772-772: Local variable djson is assigned to but never used

Remove assignment to unused variable djson

(F841)

⏰ Context from checks skipped due to timeout of 90000ms (5)
  • GitHub Check: build (windows-latest, 3.13)
  • GitHub Check: build (windows-latest, 3.12)
  • GitHub Check: build (windows-latest, 3.11)
  • GitHub Check: build (windows-latest, 3.10)
  • GitHub Check: build (windows-latest, 3.9)
🔇 Additional comments (5)
tests/test_json.py (1)

51-54: Good handling of the optional dependency.

The import of DBRef is properly wrapped in a try-except block to gracefully handle situations where the bson library is not installed.

src/monty/json.py (4)

531-531: LGTM!

The docstring has been updated to correctly reflect the addition of DBRef support.


755-756: LGTM!

Correctly added 'bson.dbref' to the list of special modules handled by the decoder.


936-937: LGTM!

The documentation for jsanitize has been updated to mention DBRef support.


956-957: LGTM!

Properly added DBRef to the list of bson types that can be preserved when allow_bson=True.

Comment on lines +765 to +778
@pytest.mark.skipif(DBRef is None, reason="bson not present")
def test_dbref(self):
dbref = DBRef(
"my_collection", 1, database="my_database", extra_field="extra_value"
)
with pytest.raises(TypeError):
json.dumps(dbref)
djson = json.dumps(dbref, cls=MontyEncoder)
x = json.loads(dbref, cls=MontyDecoder)
assert isinstance(x, DBRef)
assert x.collection == "my_collection"
assert x.database == "my_database"
assert x.extra_field == "extra_value"

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⚠️ Potential issue

Fix the JSON deserialization parameter in the test_dbref method.

There's a bug in the test implementation. Line 773 uses dbref (the object) as the input to json.loads() instead of djson (the serialized string).

Apply this fix:

-        x = json.loads(dbref, cls=MontyDecoder)
+        x = json.loads(djson, cls=MontyDecoder)

Also, consider adding more assertions to verify that all properties match the original object, similar to how other tests in this file are structured.

📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
@pytest.mark.skipif(DBRef is None, reason="bson not present")
def test_dbref(self):
dbref = DBRef(
"my_collection", 1, database="my_database", extra_field="extra_value"
)
with pytest.raises(TypeError):
json.dumps(dbref)
djson = json.dumps(dbref, cls=MontyEncoder)
x = json.loads(dbref, cls=MontyDecoder)
assert isinstance(x, DBRef)
assert x.collection == "my_collection"
assert x.database == "my_database"
assert x.extra_field == "extra_value"
@pytest.mark.skipif(DBRef is None, reason="bson not present")
def test_dbref(self):
dbref = DBRef(
"my_collection", 1, database="my_database", extra_field="extra_value"
)
with pytest.raises(TypeError):
json.dumps(dbref)
djson = json.dumps(dbref, cls=MontyEncoder)
- x = json.loads(dbref, cls=MontyDecoder)
+ x = json.loads(djson, cls=MontyDecoder)
assert isinstance(x, DBRef)
assert x.collection == "my_collection"
assert x.database == "my_database"
assert x.extra_field == "extra_value"
🧰 Tools
🪛 Ruff (0.8.2)

772-772: Local variable djson is assigned to but never used

Remove assignment to unused variable djson

(F841)

@mkhorton mkhorton marked this pull request as draft February 25, 2025 22:30
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