Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.

Identify and find telomeres, or telomeric repeats in a genome.

FastF1 is a python package for accessing and analyzing Formula 1 results, schedules, timing data and telemetry

Notes on the statistics background for statistical genetics trainees

cuJSON: A Highly Parallel JSON Parser for GPUs

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Blazingly fast cognitive complexity analysis for Python, written in Rust.

PythoC is a Python DSL compiler that compiles statically-typed Python to LLVM IR, providing C-equivalent runtime capabilities with Python syntax and compile-time metaprogramming.

Build phylogenomic datasets in seconds.

Comprehensive Antibiotic Resistance Probe Design Machine (CARPDM) for design of hybridization probes based on CARD reference sequences.

Next generation MLST toolkit

Repository with code to sketch genomic data with random projection

an API for intersections of genomic data

Ultra-rapid detection of viral variants directly from sequencing data

Ensure NEON or AVX2 is available during compilation.

use WFA2 to scan for CRISPR guide targets

A small, auxiliary index to massively improve parallel fastq parsing

A multiscale pangenome browser

revolutionary new technology that turns any image into obama

MegIS is the first in-storage processing system designed to significantly reduce the data movement overhead of the end-to-end metagenomic analysis pipeline. Described in the ISCA 2024 paper by Mans…

The second version of the Kraken taxonomic sequence classification system, forked for use in the Swedish Biodiversity in Time and Space (SweBiTS) project.

Ultrafast identification of signature sequences in microbial genomes

Krita is a free and open source cross-platform application that offers an end-to-end solution for creating digital art files from scratch built on the KDE and Qt frameworks.

Open-source graph database, tuned for dynamic analytics environments. Easy to adopt, scale and own.

Ultrafast Sample Placement on Existing Trees

Valdi is a cross-platform UI framework that delivers native performance without sacrificing developer velocity.

Rust implementation of Simhash