Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

Get your documents ready for gen AI

A deep learning-based tool to identify splice variants

Rare Disease variant reanalysis tool

CRISPR knock-in design at scale

Genome assembly soft-masking using Red (REpeat Detector)

The SimplifiedBondfinder is an automated framework for classifying and discovering various bonds and interactions in protein structures.

Process UCSC multiple alignment database, e.g. extract metadata, choose subset of species.

accurate LiftOver tool for new genome assemblies

scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data

A tool for use with clang to analyze #includes in C and C++ source files

Toolkit for evolutionary analyses of linkage groups

A Nextflow workflow to generate lift over files for any pair of genomes

🎷No ceremony, just code. Blazing fast, typesafe binary serialization.

Convert PDF to markdown + JSON quickly with high accuracy

All UCSC Genome Browser source code that is under an open source license, mostly file format converters, command line tools and C libraries. A subset of the "kent" repo, updated every three weeks.

Fork of Python 2.7 with new syntax, builtins, and libraries backported from Python 3.

UCSC Treehouse Gene Fusion Analysis Pipeline

Transfer coordinates across genomes

Scaling Single Cell Analysis to Millions of Cells

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

[DEPRECATED] Download Go binaries as fast and easily as possible.

Milvus is a high-performance, cloud-native vector database built for scalable vector ANN search

Population-scale genotyping using pangenome graphs

pycbio

BitMagic Library

Web browser-based system to evaluate variant calls in human genomes from PacBio HiFi reads

Compressor of multiple sequence alignments data

Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)