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shallowHRD Public
Forked from aeeckhou/shallowHRDThis method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Gen…
R UpdatedOct 18, 2022 -
rna-dge-salmon-deseq2 Public
Forked from tdayris-perso/rna-dge-salmon-deseq2Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
Python GNU General Public License v3.0 UpdatedAug 18, 2021 -
annotationMaker Public
Forked from bioinfo-pf-curie/annotationMakerBuild indexes and annotation files for Nextflow pipelines
Nextflow Other UpdatedJun 16, 2021 -
ATAC-seq Public
Forked from bioinfo-pf-curie/ATAC-seqNextflow pipeline for ATAC-seq data analysis
HTML Other UpdatedMay 14, 2021 -
module-5-Methodes-Outils Public
Forked from DU-Bii/module-5-Methodes-OutilsMéthodes et outils bioinformatiques pour l'analyse des données à haut débit
HTML Creative Commons Attribution Share Alike 4.0 International UpdatedMar 23, 2021 -
seuratv3wizard Public
Forked from nasqar/seuratv3wizardA web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
R GNU General Public License v3.0 UpdatedSep 22, 2020 -
SQANTI2 Public
Forked from Magdoll/SQANTI2Private repo for Liz's modified SQANTI
Python Other UpdatedJun 21, 2019 -
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nf-co.re Public
Forked from nf-core/websiteFiles for the main nf-core website >>>
PHP MIT License UpdatedFeb 18, 2019 -
galaxy Public
Forked from galaxyproject/galaxyData intensive science for everyone.
Python Other UpdatedDec 19, 2018 -
ElPiCycle Public
Forked from Albluca/ElPiCycleA R package to learn and stage cell cycle using principal curve
R GNU General Public License v3.0 UpdatedJun 5, 2018 -
eoulsan Public
Forked from GenomiqueENS/eoulsanA pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)
Java Other UpdatedApr 9, 2018 -
readr Public
Forked from tidyverse/readrRead flat files (csv, tsv, fwf) into R
R GNU General Public License v2.0 UpdatedMar 26, 2018 -
patchwork Public
Forked from thomasp85/patchworkThe Composer of ggplots
R Other UpdatedMar 11, 2018 -
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