Stars
A robust and fast clustering method for amplicon-based studies
High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.
Repository containing up-to-date definitions and models for the detection of macromolecular systems with MacSyFinder.
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Discovery of conserved gene clusters in multiple genomes
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Statistical Rethinking course winter 2022
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
Python package for the visualization of food webs (trophic networks)
CarveMe: genome-scale metabolic model reconstruction
A fast and scalable phylogenetic tree viewer for microbiome data analysis
COBRApy is a package for constraint-based modeling of metabolic networks.
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
Documentation for Crossref's REST API. For questions or suggestions, see https://community.crossref.org/