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A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.

Python 117 25 Updated Jun 24, 2025

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

C++ 50 5 Updated Apr 1, 2026

A repository for my work on rCRUX

R 13 8 Updated Jun 21, 2024

Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data

Python 20 6 Updated May 5, 2026

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

Python 24 3 Updated Jul 15, 2025

A python package to query different databases of boldsystems.org

Python 32 5 Updated Oct 28, 2024

Nextflow Tower system

Groovy 155 57 Updated Jan 30, 2025

A Marine Fauna checklist localized to the Hawaii Exclusive Economic Zone

HTML 1 1 Updated May 28, 2025

A Dynamic DNS updater for use with the Dreamhost API

Shell 98 40 Updated Feb 15, 2026

A feature-rich command-line audio/video downloader

Python 170,929 14,409 Updated Jun 16, 2026

👑 🐝 📊 Beyoncé colour palettes for R

R 84 9 Updated May 4, 2017

Steganographic encoding of a watermark in the whitespace of text

JavaScript 95 8 Updated Jun 16, 2016