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Assembly-Annotation-course

Scripts from Eukaryotic Genome Assembly and Annotation (KSL 473637 – SBL.3000)

Data source

Genomic data: Lian Q, Huettel B, Walkemeier B, Mayjonade B, Lopez-Roques C, Gil L, et al. A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range. Nat Genet. mai 2024;56(5):982‑91 https://doi.org/10.1038/s41588-024-01715-9

RNA-seq: Jiao WB, Schneeberger K. Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics. Nat Commun. 20 févr 2020;11(1):989. https://doi.org/10.1038/s41467-020-14779-y

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