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A self-hostable bookmark-everything app (links, notes and images) with AI-based automatic tagging and full text search

TypeScript 21,995 968 Updated Dec 22, 2025

a single-user bookmarking website designed to live on the Fediverse

JavaScript 530 44 Updated Sep 9, 2025

This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua

Python 30 5 Updated Sep 17, 2025

ChatMol

Python 242 30 Updated Nov 18, 2025

Code for running RFdiffusion

Python 2,662 555 Updated Nov 20, 2025

Ultra-fast in-silico structure mutation

Python 36 6 Updated Apr 9, 2025

A statistical toolkit for scientific discovery using machine learning

Jupyter Notebook 79 6 Updated Jul 10, 2024

A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

Python 39 4 Updated Oct 30, 2023

Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).

Python 392 84 Updated May 17, 2023

🍪 A cookiecutter package for an enlightened python package

Python 40 9 Updated Dec 11, 2025
Jupyter Notebook 257 43 Updated May 17, 2024

Implementation for SE(3) diffusion model with application to protein backbone generation

Python 413 65 Updated Jul 3, 2023

🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python…

Shell 183,477 26,302 Updated Dec 22, 2025

A Zsh theme

Shell 52,049 2,382 Updated Apr 29, 2025

mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data

Python 36 7 Updated Dec 12, 2025

De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

Python 183 23 Updated Apr 21, 2024

A playbook for systematically maximizing the performance of deep learning models.

29,570 2,410 Updated Jun 18, 2024

Ankh: Optimized Protein Language Model

Python 238 19 Updated Jun 16, 2025

A free, self-hostable news aggregator…

PHP 13,397 1,073 Updated Dec 21, 2025

A list of Free Software network services and web applications which can be hosted on your own servers

264,178 12,144 Updated Dec 12, 2025

A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

Python 60 14 Updated Apr 2, 2025

A conda-forge distribution.

Shell 9,032 461 Updated Dec 6, 2025

A Python script that aggregates recent popular posts from your Mastodon timeline

Python 439 58 Updated Jul 12, 2023

Yet another Yogurt - An AUR Helper written in Go

Go 12,926 391 Updated Dec 22, 2025

⚡ HugoBlox: Markdown sites in minutes. Academic/resume/lab/portfolio for AI researchers & startups. Premium templates. Deploy to GitHub Pages now in 1-click 👇

HTML 9,249 2,959 Updated Dec 18, 2025

Source code for my blog post on epitope immunogenicity predction

Jupyter Notebook 5 1 Updated Aug 26, 2018

Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

Python 159 23 Updated Dec 27, 2022

Machine Learning and Computer Vision Engineer - Technical Interview Questions

4,308 695 Updated May 20, 2025

Generate nice icons of molecules with a python script

Python 86 38 Updated May 12, 2024

Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction

Python 38 7 Updated Nov 9, 2023
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