perso

[Nature Machine Intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction

Genomic coordinates of problematic genomic regions as GRanges

Processing Sequenza output for Pyclone

Fork of https://bitbucket.org/mcgranahanlab/lohhla

mhcflow: Modern style HLA typing for class I and II alleles

Fork of the Polysolver project

🏺 Exploring novel tumor epitope identification

Filters for false-positive mutation calls in NGS

Python interface to amino acid properties and IEDB

Gene lists related to cancer immunotherapy

Library for manipulating genomic variants and predicting their effects

Calculate and explore property indices of peptides for cancer immunotherapy study

Workflow to annotate SNVs, indels, and structural variants

FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data

The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from cancer-specific splicing events (neojunctions). The code avai…

All scripts used for the GTEx Project

Pathway-Regularized Matrix Factorization

Tool to identify chimeric events from RNA-Seq data

Plot structural variant signals from many BAMs and CRAMs

don't get DUP'ed or DEL'ed by your putative SVs.

Hexo 主题 Hacker 定制。

Species non-specific expression atlas creation

Transposable element-mediated rearrangement analysis pipeline