Fixes #ISSUE_NUMBER

Major Changes

• Usability updates
  • new CLI functionality to make it standardized using click, and related changes to workflows and tests
  • standardized logging (Add logging final version #893)
  • torch version update (Update PyTorch dependency #857)
  • workflows updated to use specific pip versions (Hardcoding pip version for workflows #887)
  • single function to get all augmentations (Adding function to get augmentation transforms #889)
  • allow metrics functionality to use separate target and prediction inputs (Metrics library updated to support comma separate inputs #900)
  • trigger CI tests for all branches (Trigger tests for pull requests to all branches #855)
  • added check for case-insensitive headers for metrics (22ee9bd)
• New features
  • new segmentation architecture (Add dynunet model #873)
  • new metrics (Added metrics for BraTS Path challenge #885)

Checklist

• CONTRIBUTING guide has been followed.
• PR is based on the current GaNDLF master .
• Non-breaking change (does not break existing functionality): provide as many details as possible for any breaking change.
• Function/class source code documentation added/updated (ensure typing is used to provide type hints, including and not limited to using Optional if a variable has a pre-defined value).
• Code has been blacked for style consistency and linting.
• If applicable, version information has been updated in GANDLF/version.py.
• If adding a git submodule, add to list of exceptions for black styling in pyproject.toml file.
• Usage documentation has been updated, if appropriate.
• Tests added or modified to cover the changes; if coverage is reduced, please give explanation.
• If customized dependency installation is required (i.e., a separate pip install step is needed for PR to be functional), please ensure it is reflected in all the files that control the CI, namely: python-test.yml, and all docker files [1,2,3].