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sarthakpati merged 1 commit into from
Sep 11, 2024
Merged

Added itcr connectivity map #938

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1 change: 1 addition & 0 deletions docs/index.md
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Expand Up @@ -28,6 +28,7 @@ and **CSV inputs** that describe the training data.
- [Usage](./usage.md)
- [Customize the training and inference](./customize.md)
- [Extending GaNDLF](./extending.md)
- [ITCR Connectivity](./itcr_connectivity.md)
- [FAQ](./faq.md)
- [Acknowledgements](./acknowledgements.md)

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47 changes: 47 additions & 0 deletions docs/itcr_connectivity.md
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# ITCR Connectivity

This section includes a reference of all ongoing and existing connections between FeTS and other projects funded under the [Informatics Technology for Cancer Research (ITCR)](https://itcr.cancer.gov/) program.

A connectivity map featuring all ITCR projects can be found [here](https://www.ndexbio.org/#/network/04c0a7e8-af92-11e7-94d3-0ac135e8bacf).

- [Existing Connections](#existing-connections)
- [DCMTK](#dcmtk)
- [Synapse PACS](#synapse-pacs)
- [FLAIM](#flaim)
- [Ongoing Development](#ongoing-development)
- [XNAT](#xnat)
- [OHIF](#ohif)
- [Radiomics.io](#radiomics)
- [RadXTools](#radxtools)
- [TCIA](#tcia)


## Existing Connections

### DCMTK
GaNDLF uses [DCMTK - DICOM ToolKit (DCMTK)](https://dicom.offis.de/dcmtk.php.en) (through [ITK](https://itk.org/)) for DICOM file handling.

### Synapse PACS
[GaNDLF's Metrics Suite](https://docs.mlcommons.org/GaNDLF/usage/#generate-metrics) is used by [Synapse PACS](https://www.synapse.org/).

### FLAIM
GaNDLF models can be ingested through FLAIM to facilitate interoperability and privacy preservation.

## Ongoing Development

### XNAT
Enable the use of GaNDLF's models to databases and population cohorts defined by [XNAT](https://xnat.org).

### OHIF
Online visualization using OHIF.

### Radiomics
Extraction of downstream features of automatically generated segmentation maps using [Radiomics.io](https://www.radiomics.io/).

### RadXTools
Integration with [RadXTools](https://radxtools.github.io/) for extended functionality.

### TCIA
Integration with TCIA's REST APIs to make downloading datasets easier.

Contact [gandlf [at] mlcommons.org](mailto:gandlf@mlcommons.org) with any questions.
1 change: 1 addition & 0 deletions mkdocs.yml
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Expand Up @@ -8,6 +8,7 @@ nav:
- Usage: usage.md
- Customize Training and Inference: customize.md
- Extending GaNDLF: extending.md
- ITCR Connectivity: itcr_connectivity.md
- FAQ: faq.md
- Acknowledgements: acknowledgements.md
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