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Multi-Omics Factor Analysis

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

AnnData interoperability in R

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

Analysis pipelines for cancer genome sequencing in mice.

Querying cellular states and programs by learning representations of gene sets