The main issue is with the AMAZON_AWS and AWS_EC2 addresses.
2284 addresses are simultaneously in different lists.

grep 3.4.16.0/20 *
ndpi_amazon_aws_ec2_match.c.inc: { 0x03041000 /* 3.4.16.0/20 */, 20, NDPI_PROTOCOL_AWS_EC2 },
ndpi_amazon_aws_match.c.inc: { 0x03041000 /* 3.4.16.0/20 */, 20, NDPI_PROTOCOL_AMAZON_AWS },

It's unclear how to resolve this.
The second issue is TOR and WHATSAPP_CALL. 1009 addresses are simultaneously in different lists.
IMHO, addresses from the TOR list should not be included in other lists.
The full list is attached.

ip_dup_list.txt