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1. openslide openslide Public

   Forked from openslide/openslide

   C library for reading virtual slide images

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2. CRC_cell_analysis CRC_cell_analysis Public

   Code for the analysis of output of the cell classification pipeline as part of the whole slide analysis detailed in the paper "Computational pathology applied to clinical colorectal cancer cohorts …

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3. CZIReader CZIReader Public

   A custom CZI Reader built upon the implementation within the BioFormats library.

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4. image_tiling image_tiling Public

   Code used to convert CZI format slide images into a tiled JPEG format, for use with other image analysis pipelines.

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5. CRC_cell_classification CRC_cell_classification Public

   The whole slide image cell classification pipeline used in the paper "Computational pathology applied to clinical colorectal cancer cohorts identifies immune and endothelial cell spatial patterns p…

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