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Naturalis Biodiversity Center

25 followers
Leiden, the Netherlands
https://www.naturalis.nl

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barcode-constrained-phylogeny barcode-constrained-phylogeny Public

Pipeline for building topologically-constrained phylogenies from DNA barcode data

Python 2 3

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Showing 10 of 183 repositories

sdmdl Public
Species Distribution Modelling using Deep Learning

naturalis/sdmdl’s past year of commit activity

Python 24 MIT 11 4 21 Updated Oct 9, 2025
DWCAConfig Public
DWCA Configuratie bestanden om data te downloaden uit ES (NBA)

naturalis/DWCAConfig’s past year of commit activity

Shell 1 2 1 1 Updated Oct 8, 2025
evobio2 Public
EvBio2 UL computer practicum

naturalis/evobio2’s past year of commit activity

0 GPL-3.0 0 0 0 Updated Oct 7, 2025
barcode_validator Public
Standardized validation of barcodes

naturalis/barcode_validator’s past year of commit activity

Python 1 Apache-2.0 5 3 0 Updated Oct 6, 2025
galaxy-pipeline-hybseq Public
End-to-end implementation of HybSeq analysis in Naturalis's Galaxy portal

naturalis/galaxy-pipeline-hybseq’s past year of commit activity

Python 0 MIT 1 1 0 Updated Sep 26, 2025
galaxy-tool-spreading-correction Public
galaxy wrapper for spreading-correction

naturalis/galaxy-tool-spreading-correction’s past year of commit activity

Python 0 0 0 0 Updated Sep 26, 2025
galaxy-tool-make-otu-table Public

naturalis/galaxy-tool-make-otu-table’s past year of commit activity

Python 0 0 0 0 Updated Sep 26, 2025
galaxy-tool-prinseq-sequence-analysis Public
transferred from old galaxy

naturalis/galaxy-tool-prinseq-sequence-analysis’s past year of commit activity

Shell 0 0 0 0 Updated Sep 26, 2025
galaxy-tool-sickle-pe Public
Galaxy wrapper for sickle paired-end trimming, input is a zip file

naturalis/galaxy-tool-sickle-pe’s past year of commit activity

Python 0 1 0 0 Updated Sep 26, 2025
galaxy-tool-taxonomic-accumulation Public
Use a python script to accumulate all identifications based on taxonomy.

naturalis/galaxy-tool-taxonomic-accumulation’s past year of commit activity

Python 0 AGPL-3.0 0 0 0 Updated Sep 26, 2025

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