Stars
A curated list of modern Generative Artificial Intelligence projects and services
An Open-Source Package for Network Embedding (NE)
PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
A scientific instrument for investigating latent spaces
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
📈 📊 Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.
Formalizing and benchmarking open problems in single-cell genomics
R package implementation of Milo for testing for differential abundance in KNN graphs
Interpretation of cell states using reference single-cell maps
Create a magnified inset of part of a ggplot object
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.
Open-source data framework for biology. Context and memory for datasets and models at scale. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologi…
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Generate high quality, publication ready visualizations for single cell transcriptomics data.
Methods to discover gene programs on single-cell data
Improved statistical classifier for immune repertoires
Fast and accurate in silico inference of HLA genotypes from RNA-seq
A guide to using a Seurat object in conjunction with RNA Velocity
dandelion - A single cell BCR/TCR V(D)J-seq analysis package