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zed-r2 Public
Forked from ocsmit/zed-rjust another R language support for Zed editor
Tree-sitter Query UpdatedNov 1, 2025 -
aurora-mito-etl Public
Extracts inhibitors of Mitochondrial Complex I from PubMed database using LLM
Python GNU General Public License v3.0 UpdatedOct 22, 2025 -
aurora-mcp Public
Multi-source bioinformatics knowledge base and MCP server integrating plant–compound–mitochondrial data for Aurora ETL.
Python GNU General Public License v3.0 UpdatedOct 13, 2025 -
fusioncatcher Public
Finder of Somatic Fusion Genes in RNA-seq data
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fqtools Public
Tools for processing fastq files
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boat-data-etl Public
ETL pipelien
Jupyter Notebook GNU General Public License v3.0 UpdatedJun 18, 2025 -
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bcb731 Public
Forked from iskandr/bcb731Defense Against the Dark Arts
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sanbomics_scripts Public
Forked from mousepixels/sanbomics_scriptsscripts and notebooks from sanbomics
Jupyter Notebook UpdatedAug 13, 2023 -
ssGSEApy Public
Implements in Python3 the ssGSEA method (Subramanian et al. PNAS 2005).
Python GNU General Public License v3.0 UpdatedMar 6, 2023 -
BI-BE-CS-183-2023 Public
Forked from pachterlab/BI-BE-CS-183-2023Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Jupyter Notebook UpdatedMar 5, 2023 -
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interactivenn Public
Forked from heberleh/interactivennInteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
JavaScript Other UpdatedJun 4, 2022 -
fuzzion2 Public
Forked from stjude/fuzzion2fuzzy fusion finder
C++ Apache License 2.0 UpdatedFeb 18, 2022 -
MCML Public
Forked from pachterlab/MCMLPython BSD 2-Clause "Simplified" License UpdatedAug 24, 2021 -
readfq Public
Forked from lh3/readfqFast multi-line FASTA/Q reader in several programming languages
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partig Public
Forked from lh3/partigAn experimental tool to estimate the similarity between all pairs of contigs
C UpdatedApr 12, 2021 -
scRNA_cell_deconv_benchmark Public
Forked from qianhuiSenn/scRNA_cell_deconv_benchmarkEvaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
R UpdatedApr 9, 2021 -
lloyd-max-quantizer Public
Forked from ninfueng/lloyd-max-quantizerPython implementation of Lloyd-Max quantizer.
Python MIT License UpdatedApr 4, 2021 -
kaplanmeier Public
Forked from erdogant/kaplanmeierCreate survival curves using kaplan-meier, the log-rank test.
Python MIT License UpdatedMar 3, 2021 -
arriba Public
Forked from suhrig/arribaFast and accurate gene fusion detection from RNA-Seq data
C++ Other UpdatedMar 2, 2021 -
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scGeneFit-python Public
Forked from solevillar/scGeneFit-pythonPython code for genetic marker selection using linear programming
Python MIT License UpdatedNov 15, 2020 -
sra-explorer Public
Forked from ewels/sra-explorerWeb application to explore the Sequence Read Archive.
HTML GNU General Public License v2.0 UpdatedNov 4, 2020 -
Deep-Feature-Selection Public
Forked from cyustcer/Deep-Feature-SelectionPython (PyTorch) realization of Deep Feature Selection (Model, Algorithm)
Python UpdatedJul 26, 2020
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