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Chris Titus Tech's Windows Utility - Install Programs, Tweaks, Fixes, and Updates
WebApps in pure Python. No JavaScript, HTML and CSS needed
Bookmarks Extension for Visual Studio Code
A glimpse into your computer's temperature, voltage, fan speed, memory usage and CPU load.
Tools (written in C using htslib) for manipulating next-generation sequencing data
Conda recipes for the bioconda channel.
Aggregate results from bioinformatics analyses across many samples into a single report.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Repository to host tool-specific module files for the Nextflow DSL2 community!
Tools for working with genomic and high throughput sequencing data.
SUPPA: Fast quantification of splicing and differential splicing
tools for adding mutations to existing .bam files, used for testing mutation callers
HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
A fully reproducible and state-of-the-art ancient DNA analysis pipeline