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11 stars written in Python
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WebApps in pure Python. No JavaScript, HTML and CSS needed

Python 3,299 129 Updated Nov 3, 2025

SUPPA: Fast quantification of splicing and differential splicing

Python 283 63 Updated Jun 19, 2024

tools for adding mutations to existing .bam files, used for testing mutation callers

Python 247 85 Updated Oct 18, 2024

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

Python 218 66 Updated Oct 20, 2025

Command-line tool for the visualization of splicing events across multiple samples

Python 132 45 Updated Jun 28, 2024

Deep Learning based cell composition analysis with Scaden.

Python 83 29 Updated Nov 5, 2024

A Variant Call Format reader for Python.

Python 58 12 Updated May 6, 2025

Meta-Omics Software for Community Analysis

Python 37 5 Updated Nov 4, 2024

Tool for computation of the minimal coverage depth for given variant allele frequency and probability of sequencing error.

Python 12 7 Updated Aug 24, 2020

Oncogenicity Variant Interpreter for somatic variants

Python 5 Updated Jun 4, 2025
Python 3 Updated Apr 16, 2024