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Add BiG-SCAPE

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#509 In nf-core/funcscan;

· juanmobovi opened on Dec 9, 2025

Feature request: enable --clusterhmmer, --fullhmmer, and --tigrfam options in the antiSMASH module

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#503 In nf-core/funcscan;

· yusukepocky opened on Oct 27, 2025

Bakta HMM pre-annotation files input fails

bugSomething isn't workingSomething isn't working

Status: Open.

#501 In nf-core/funcscan;

· jfy133 opened on Oct 22, 2025

Bug in ARG + taxonomy merging

bugSomething isn't workingSomething isn't working

requires-upstream-fix

Status: Open.

#491 In nf-core/funcscan;

· jasmezz opened on Aug 14, 2025

Fix eventual ampcombi_parsetables crash

enhancementImprovement for existing functionalityImprovement for existing functionality

requires-upstream-fix

Status: Open.

#489 In nf-core/funcscan;

· jasmezz opened on Jul 22, 2025

Update argNorm to current version

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#487 In nf-core/funcscan;

· jasmezz opened on Jul 17, 2025

Add support for reading external InterProScan results as pipeline input

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#485 In nf-core/funcscan;

· amizeranschi opened on Jul 9, 2025

Add rundbcan for the CAZyme (carbohydrate active enzyme) and CGC (CAZyme Gene Cluster) annotation

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

Enhancement

#481 In nf-core/funcscan;

· Xinpeng021001 opened on Jun 14, 2025

Integrate the existing eggNOG-mapper module into the pipeline

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#473 In nf-core/funcscan;

· amizeranschi opened on Apr 13, 2025

Add support for generating mmseqs taxonomy reports

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#466 In nf-core/funcscan;

· amizeranschi opened on Mar 21, 2025

Enable GECCO optional features for integration with other tools

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#450 In nf-core/funcscan;

· amizeranschi opened on Feb 4, 2025

How to speed up MMseqs2 taxonomy assignment with GTDB database on large contigs?

questionFurther information is requestedFurther information is requested

Status: Open.

#424 In nf-core/funcscan;

· lucianhu opened on Oct 18, 2024