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1. Commits on Oct 8, 2026

   • Merge pull request #1122 from nf-core/patch

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   • Move seqeralabs/action-tower-launch to @v2 (v2.4.0)

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2. Commits on Oct 7, 2026

   • Merge pull request #1121 from nf-core/patch

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   • Switch fix-linting to the hardened nf-core/actions reusable workflow

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3. Commits on Aug 1, 2026

   • Merge pull request #1083 from nf-core/dev

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   • Update CHANGELOG.md

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4. Commits on Jul 30, 2026

   • chore: bump nextflow to match nf-schema

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   • Merge remote-tracking branch 'upstream/dev' into dev

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   • chore: update CPUs

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   • chore: fix cpus and increase memory for bowtie2_assembly_align

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5. Commits on Jul 29, 2026

   • Merge pull request #1095 from dialvarezs/fix/5.5.0-review2-fixes

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6. Commits on Jul 28, 2026

   • Merge remote-tracking branch 'upstream/dev' into dev

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   • Merge pull request #1094 from dialvarezs/fix/convert-depths-single-pass

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   • chore: revert memory increase

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   • fix: prevent pypolca dropping assemblies without short reads

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   • docs: update regarding polishing

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   • docs: default long-read only qc tool is chopper now

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   • chore: reorder changelog

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   • chore: keep the CONVERT_DEPTHS memory bump

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   • fix: convert depths in a single streaming pass

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   • chore: update full test resources

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   • Merge pull request #1091 from dialvarezs/chore/update-resources

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   • Merge pull request #1090 from dialvarezs/fix/5.5.0-review1-fixes

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   • chore: update changelog

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7. Commits on Jul 27, 2026

   • Merge pull request #1093 from nf-core/fix/nftignore-checkm-storage

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   • chore: add multiqc to changelog dependencies table

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   • Merge branch 'dev' into fix/nftignore-checkm-storage

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   • chore: fix nf-core version

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   • fix: ignore CheckM storage subdirectories in nf-test snapshots

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   • Merge branch 'main' into dev

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   • Merge pull request #1092 from nf-core/patch

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   • Remove vulnerable PR-comment artifact pattern

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   • chore: add pypolca version to changelog

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   • chore: more memory for minimap2

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   • chore: multiqc and metaspades

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