Skip to content

Fix overzealous schema errors when only a single param does not pass #858

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
jfy133 merged 6 commits into from
Sep 5, 2025
Merged

Fix overzealous schema errors when only a single param does not pass #858

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
3f4102a
Update nf-schema to stop all params being reported as erroring out
jfy133 Sep 5, 2025
d913c30
Fix URL typo
jfy133 Sep 5, 2025
a233e23
Fix typo in github handlge
jfy133 Sep 5, 2025
98cd7f5
Fix typo in github handlge
jfy133 Sep 5, 2025
b50d47f
Add HiRSE code promo badge
jfy133 Sep 5, 2025
44c49d3
Fix RO create
jfy133 Sep 5, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#850](https://github.com/nf-core/mag/pull/850) - Fixed some modules of the GDTBTk subworkflow not being represented in version lists (fix by @jfy133)
- [#852](https://github.com/nf-core/mag/pull/852) - Fixed version reporting by ensure all modules are represented in final version.yml for MultiQC (by @jfy133)
- [#854](https://github.com/nf-core/mag/pull/854) - Update porechop/abi to a patched version to prevent duplicated read names (reported by @palec87, fix by @jfy133)
- [#858](https://github.com/nf-core/mag/pull/858) - Fix a single parameter validation failure reporting errors for all parameters by updated nf-schema to 2.5.1 (reported by @Pranjal-Bioinfo, fix by @nvnieuwk and @jfy133)

### `Dependencies`

Expand Down
2 changes: 2 additions & 0 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,8 @@

[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)

![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?style=plastic&label=HiRSE&labelColor=005aa0&link=https%3A%2F%2Fgo.fzj.de%2FCodePromo)

## Introduction

**nf-core/mag** is a bioinformatics best-practise analysis pipeline for assembly, binning and annotation of metagenomes.
Expand Down
2 changes: 1 addition & 1 deletion nextflow.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -533,7 +533,7 @@ manifest {

// Nextflow plugins
plugins {
id 'nf-schema@2.4.2'
id 'nf-schema@2.5.1'
}

validation {
Expand Down
Loading