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update modules#619

Merged
ramprasadn merged 7 commits into
devfrom
module_updates
Oct 1, 2024
Merged

update modules#619
ramprasadn merged 7 commits into
devfrom
module_updates

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@ramprasadn

@ramprasadn ramprasadn commented Sep 30, 2024

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/raredisease branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Ensure the test suite passes (nextflow run . -profile test_one_sample,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions

github-actions Bot commented Sep 30, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit a910e42

+| ✅ 187 tests passed       |+
#| ❔   7 tests were ignored |#
!| ❗   1 tests had warnings |!
Details

❗ Test warnings:

  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required

❔ Tests ignored:

  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: .github/CONTRIBUTING.md
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: assets/nf-core-raredisease_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-raredisease_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-raredisease_logo_dark.png
  • modules_config - modules_config

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-09-30 12:43:17

@ramprasadn ramprasadn marked this pull request as ready for review September 30, 2024 12:48
peterpru
peterpru approved these changes Oct 1, 2024
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@peterpru peterpru left a comment

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That is a large number of lines changed 😄, I checked per commit and it looks good to me.

@ramprasadn ramprasadn merged commit d054431 into dev Oct 1, 2024
@ramprasadn ramprasadn deleted the module_updates branch October 1, 2024 07:41
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@peterpru peterpru peterpru approved these changes

@jemten jemten Awaiting requested review from jemten

@rannick rannick Awaiting requested review from rannick

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@ramprasadn @peterpru