Release v3.0.0#825
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Co-authored-by: Felix Lenner <52530259+fellen31@users.noreply.github.com>
Co-authored-by: Felix Lenner <52530259+fellen31@users.noreply.github.com>
Gens replace local module
Migrate file publishing from publishDir to centralized output {} block - I
Migrate file publishing from publishDir to centralized output {} block - II
extend vcfanno sanity check
Fix issues in call_sv_MT & extend vcfanno sanity check
review comments
maxulysse
reviewed
May 7, 2026
maxulysse
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I would advise against modules binaries since it adds a dependencies on wave, that could cause some issues.
You can just move the scripts from local modules in the root bin folder, that should work the same.
Release review comments - III
Bug fix: Convert a channel to value from queue
Bug fix: Run mitosalt for all samples
fellen31
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May 11, 2026
fellen31
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I think you have addressed most of my comments, perhaps we can make issues of the ones you feel are worthwhile but don't want to address before the release!
| The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) | ||
| and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). | ||
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| ## 3.0.0 - Mario [xxxx-xx-xx] |
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Just remember to add a date :)
peterpru
approved these changes
May 11, 2026
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile test_singleton,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).