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template: Fix nf-core tools version in download_pipeline.yml #4124

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beatrizsavinhas merged 3 commits into from
Mar 20, 2026
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template: Fix nf-core tools version in download_pipeline.yml #4124

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429158b
Fix nf-core tools version in download_pipeline workflow
beatrizsavinhas Mar 19, 2026
093612a
Update CHANGELOG.md
beatrizsavinhas Mar 19, 2026
4e83774
run pre-commit
beatrizsavinhas Mar 19, 2026
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -68,6 +68,7 @@
- [nf-slack](https://github.com/seqeralabs/nf-slack)
- [nf-teams](https://github.com/nvnieuwk/nf-teams)
- Add `.lineage/` directory to the template .gitignore ([#4075](https://github.com/nf-core/tools/pull/4075)).
- Fix nf-core tools version to what is specified in `.nf-core.yml` for the GitHub workflow `download_pipeline.yml` ([#4124](https://github.com/nf-core/tools/pull/4124)).

#### Version updates

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8 changes: 7 additions & 1 deletion nf_core/pipeline-template/.github/workflows/download_pipeline.yml
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Expand Up @@ -54,10 +54,16 @@ jobs:
with:
apptainer-version: 1.3.4

- name: Read .nf-core.yml
uses: pietrobolcato/action-read-yaml@9f13718d61111b69f30ab4ac683e67a56d254e1d # 1.1.0
id: read_yml
with:
config: ${{ github.workspace }}/.nf-core.yml

- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install git+https://github.com/nf-core/tools.git
pip install nf-core==${{ steps.read_yml.outputs['nf_core_version'] }}

- name: Make a cache directory for the container images
run: |
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