Add fallback to Download Pipeline Workflow#2846
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MatthiasZepper merged 3 commits intoMar 14, 2024
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…upported by the pipeline.
…p fails. Modify if-clause of fallback step accordingly.
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See tests for the modified workflow on my fork of the bamtofastq pipeline.
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Apparently, not all nf-core pipelines fully support stub runs. Since the
download_pipeline.ymlGitHub Actions workflow tested the pipeline in-stub/-stub-runmode, this test failed on some pipeline repositories. With this update, the workflow will still attempt running the downloaded pipeline with the -stub option first, but if that fails, it tries to run the pipeline without the -stub option. Mind that any step failure will trigger the regular run, whether it is related to the-stubparameter or not.Additionally, I have added the
editedandsynchronizedtypes to the event trigger, so the test is automatically rerun, if further changes todevare made while the PR tomasteris open.PR checklist
CHANGELOG.mdis updated