Template: add option to exclude code linters for custom pipeline template#3084
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mashehu
approved these changes
Jul 29, 2024
mirpedrol
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Jul 29, 2024
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
adamrtalbot
reviewed
Jul 30, 2024
| ], | ||
| } | ||
| # Get list of files we're skipping with the supplied skip keys | ||
| self.skip_paths = set(sp for k in skip_paths for sp in skippable_paths[k]) |
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We should consider the ability to include or exclude specific files via the .nf-core.yml here. Not clear how we should do this yet but it could be a specific key for the .nf-core.yml:
exclude:
- .github/workflows/fix-linting.yml
- .github/workflows/clean-up.yml
include:
- .github/workflows/ci.ymlThis would override the broad categories by the wizard. It could be bypassed when using the TUI for now, consider it an advanced feature.
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Part of #2340 and #2342