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Add de novo assembler for nanopore data

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

Enhancement

#573 In nf-core/viralrecon;

· svarona opened on Nov 25, 2025

Parameter validation error for --primer_set_version 5.3.2 - expects Number but receives String

bugSomething isn't workingSomething isn't working

Status: Open.

#571 In nf-core/viralrecon;

· nascimento-jean opened on Nov 23, 2025

Title: Support for Using Viralrecon with Other Arboviruses (e.g., Chikungunya and Dengue)

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#570 In nf-core/viralrecon;

· nascimento-jean opened on Nov 20, 2025

Unable to run viralrecon using custom FASTA, GFF and Primer BED file for nanopore data

bugSomething isn't workingSomething isn't working

Status: Open.

#568 In nf-core/viralrecon;

· Rohit-Satyam opened on Nov 19, 2025

Remove mandatory reference in de novo assembly

Status: Open.

#567 In nf-core/viralrecon;

· AnnaNoren opened on Nov 13, 2025

·  

3.1

Add filtering step of blast results

Status: Open.

#566 In nf-core/viralrecon;

· AnnaNoren opened on Nov 13, 2025

·  

3.1

Add documentation

Status: Open.

#565 In nf-core/viralrecon;

· AnnaNoren opened on Nov 13, 2025

·  

3.1

Add enterovirus testing profile

Status: Open.

#564 In nf-core/viralrecon;

· AnnaNoren opened on Nov 13, 2025

·  

3.1

Add ViralConsensus

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#561 In nf-core/viralrecon;

· niemasd opened on Nov 6, 2025

fix release-announcements.yml

bugSomething isn't workingSomething isn't working

Status: Open.

#560 In nf-core/viralrecon;

· svarona opened on Nov 6, 2025

BCFTools not running, but pipeline completing

bugSomething isn't workingSomething isn't working

Status: Open.

#557 In nf-core/viralrecon;

· fmtwohig opened on Oct 30, 2025

Add enterovirus typing steps in de novo assembly

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementImprovement for existing functionalityImprovement for existing functionality

feature-requestRequest for a new pipeline featureRequest for a new pipeline feature

Status: Open.

Enhancement

#555 In nf-core/viralrecon;

· AnnaNoren opened on Oct 29, 2025

·  

3.1