This is the development home of the workflow management system Snakemake. For general information, see

A conda-smithy repository for mupdf.

MkDocs plugin to programmatically generate documentation pages during the build

A conda-smithy repository for pymupdf.

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

Simple GitHub action that can be used to check if a commit or branch contains a given tag.

A Java API for high-throughput sequencing data (HTS) formats.

DNAnexus platform client libraries

Effortless argument parser

A DSL for data-driven computational pipelines

Aggregate results from bioinformatics analyses across many samples into a single report.

Simple, thread-safe, counter based progress logging

Run all examples for any locally cloned rust crate

Conda recipes for the bioconda channel.

API client for crates.io, the Rust crate registry.

Test data to be used for automated testing with the nf-core pipelines

Test data for MultiQC. See https://github.com/ewels/MultiQC

Nextflow plugins index repository

Grayskull 💀 - Recipe generator for Conda

Repository containing scripts to generate optimized configurations for resource utilization for nf-core AWS Megatests.

Package for clustering sequences de novo and assignment to existing nomenclature

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Migrate a project from Poetry/Pipenv/pip-tools/pip to uv package manager

Global alignment and alignment extension