Stars
This is the standalone version of the EviAnn pipeline
TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments
R-package: Calculation of haplotype blocks and libraries
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…
Clinical Genomics Uppsala inheritance disease pipeline for WGS
🌲 broom helpers for decision tree methods (rpart, randomForest, and more!) 🌲
Nextflow DSL2 pipeline to call variants on long read alignment.
A snakemake workflow for assembly with HiFi
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
Read-based phasing of genomic variants, also called haplotype assembly
R package for pedigree inference based on SNP data
InStruct Bayesian MCMC Global Population Structure Analysis Program
A package for population structure inference from RAD-seq data
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…
compile a phylogenetic dataset from genewise CDS fasta files
GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data
R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
Easy353 is a tool for recovering Angiosperms353 gene set.
A nextflow pipeline for decontamination of short reads, long reads and contigs