This repo is a list of papers that discuss errors in research due to software errors

Interactive visualization and sharing of cell tracking data in the browser

Run pose estimation across frameworks

The emerging governance structure of the movement project.

A project for prototyping extracellular electrophysiology probe and anatomy alignment. Eventually this should be subsumed into spikeinterface / brainglobe.

Collections of cool screenshots of students' work

Shared introductory slides to use at the start of each day at OSW

A place to create and discuss ideas for the 2025 Open Software Week hackathon

🗿 view github artifacts in your browser

A "toy" website repository for testing our sphinx build and deploy GitHub actions

A handbook about open-source tools for tracking animals in videos and quantifying behaviour.

Using the movement package to analysing mouse home cage monitoring data acquired in Smart-Kages and tracked with DeepLabCut.

Slides for the internal SWC tea hour

Exploring how to stitch drone imagery and animal trajectories

Reusable Qt elements

Code used to generate figures for Siegle, Jia et al. (2019)

Slides for NIU meeting about parallelising template building (and possibly other things)

Managing video metadata for animal behaviour experiments

Numcodecs implementation of photon conversion using poisson statistics

cell detection in calcium imaging recordings

Automated and reproducible analysis of multiphoton imaging datasets

A repository for formalising and testing extracellular ephys pipelines

Analysis of probe and camera recordings of mice running on treadmills

A tool for translating between common coordinate frameworks using deformation matrices.

Open Source Programme Office