Lists (6)
Starred repositories
37
stars
written in Perl
Clear filter
💻 🎓 Git-it is a (Mac, Win, Linux) Desktop App for Learning Git and GitHub
a command line tool for URL parsing and manipulation.
Trinity RNA-Seq de novo transcriptome assembly
A curated list of awesome Perl frameworks and libraries. Come on Pull Requests!
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Biopieces is a bioinformatic framework of tools easily used and easily created.
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
A toolset for profiling alternative splicing events in RNA-Seq data.
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link belo…
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.
Flexible circular visualization of genome-associated data with BioPerl and SVG.
A tutorial for learning de novo assembly
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
The wiki repo, with pull request enabled, for the rnaseq_tutorial
Copy number estimation of highly duplicated sequences
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2017
Docker container for the Ergatis web framework. This can be used as a base image to spawn off various pipelines
Perl Script for using in Bioinformatics tasks