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Issue with Thymus ENCODE WGBS Data

Status: Open.

#108 In nloyfer/wgbs_tools;

· Danielsm8 opened on Dec 12, 2025

Compatibility with biomodal (duet) BAM files?

Status: Open.

#107 In nloyfer/wgbs_tools;

· ativey07 opened on Dec 12, 2025

add_cpg_counts does not work

Status: Open.

#105 In nloyfer/wgbs_tools;

· ecmra opened on Nov 17, 2025

new release?

Status: Open.

#103 In nloyfer/wgbs_tools;

· douglasgscofield opened on Oct 21, 2025

2 potential issues with bam2pat for nanopore data

Status: Open.

#102 In nloyfer/wgbs_tools;

· e-manduchi opened on Sep 17, 2025

Last 2 columns of output of <code>wgbstools convert -L</code>

Status: Open.

#101 In nloyfer/wgbs_tools;

· yunfeiguo opened on Aug 9, 2025

pyproject.toml specifies python &gt; 3.12 – is this necessary?

Status: Open.

#97 In nloyfer/wgbs_tools;

· blex-max opened on May 15, 2025

what does this warning message mean?

Status: Open.

#95 In nloyfer/wgbs_tools;

· eesiribloom opened on May 13, 2025

Is is presently possible to output the scores for optimal segmentation when using <code>segment</code>?

Status: Open.

#93 In nloyfer/wgbs_tools;

· blex-max opened on Mar 26, 2025

How to resolve the issue of wgbstools mix_pat not being able to parse the hg38 genome?

Status: Open.

#91 In nloyfer/wgbs_tools;

· MyXu0520 opened on Feb 18, 2025

init_genome on hg38 generates incorrect CpG.bed.gz file.

Status: Open.

#90 In nloyfer/wgbs_tools;

· qiangfu-eu opened on Jan 27, 2025

Custom annotation file to use with wgbstool convert function

Status: Open.

#89 In nloyfer/wgbs_tools;

· almanza-d opened on Dec 6, 2024