Density-preserving data visualization tools den-SNE and densMAP

Public repo for STEP: Spatial Transcriptomics Embedding Procedure

Deep Multi-Magnification Network for multi-class tissue segmentation of whole slide images

Pathway Enrichment Analysis and Visualization for Single-cell Data

Estimate the distance between data clusters by Hellinger's difference

Deep probabilistic analysis of single-cell omics data

scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks

single-cell project

1st place solution for SIIM-FISABIO-RSNA COVID-19 Detection Challenge

BiMiR is a bicluster database that provides the condition-specific microRNA target predictions.

GSA-SNP2 is successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values (possibly obtained from VEGAS or GATE…

High throughput synchronous and asynchronous reinforcement learning

Spectral segmentation described in Aksoy et al., "Semantic Soft Segmentation", ACM TOG (Proc. SIGGRAPH), 2018