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📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
This repository focuses on the metagenomic analysis of bioaerosols using nanopore sequencing. It highlights our use of nanopore's R10 chemistry for its high accuracy and throughput, alongside the R…
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Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
A snakemake pipeline to trim primers and adaptors from illumina reads and also provides useful statistics about the reads before and after trimming.
Given a set of index, fastq and sample to barcode file, generate a directory structure with each sample's forward and reverse reads contained in individual sample directories.
A snakemake workflow for performing metatranscriptomics
A snakemake pipeline for performing read and assembly based shotgun metagenomics from QC to statistical analysis and visualizations
A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline